PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1222s0046.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 180aa    MW: 20017.1 Da    PI: 4.5556
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1222s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-151464148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                         +g+W++eEd ll + + ++G g W+ ++ +      gRt++++k++w+k+l
  Kaladp1222s0046.1.p 14 KGAWSEEEDALLREWIDEHGEGKWHQVPLKSAgslPGRTANDVKNHWNKHL 64
                         79*************************999888999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.73E-14969IPR009057Homeodomain-like
PROSITE profilePS5129420.023968IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-171167IPR009057Homeodomain-like
SMARTSM007173.0E-111366IPR001005SANT/Myb domain
PfamPF002497.4E-131464IPR001005SANT/Myb domain
CDDcd001674.39E-121664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MATDDGARRY GVRKGAWSEE EDALLREWID EHGEGKWHQV PLKSAGSLPG RTANDVKNHW  60
NKHLCKKTAS GQRFSTDIGK SIIITPTTST AASKEGHDHM TSFDLFSTKE DVLEQMQCWK  120
SLLDDQVSDQ EVAAVSSGSC SVEAQKPENG LTERSFDIEM WDFLDDEWLA VTSSLLQDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.13e-18myb domain protein 114