PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp1250s0002.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 228aa MW: 25861.5 Da PI: 10.0003

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp1250s0002.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.5	3.9e-16	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ps+v+ +l l +f+++h + ++ ++tl de+ +++ + ++ + l++GWk+F+ a++L +gD +vF+l++ + f Kaladp1250s0002.2.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHDLTDGDALVFQLIKPTAF 212 89**********************533..5569***********..555544..**********************997888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kaladp1250s0002.2.p 213 --KVYITR 218 ..776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-21	122	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-24	122	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.48E-27	127	218	No hit	No description
Pfam	PF02362	9.4E-14	129	218	IPR003340	B3 DNA binding domain
SMART	SM01019	6.8E-23	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.18	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL TTPPMKQRKP RAVEKKMVPV 60 RRSDRLSDKP GPVYLEVDVD RYDRVTIPRR VSKARDLSNQ VYASEEERSY SIKKAEEVQA 120 ALDATHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPNRDS EVTLIDEDDE EYPTVYLPRK 180 TGLSGGWKGF AVAHDLTDGD ALVFQLIKPT AFKVYITRAS GFKKTAA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010520114.1	1e-97	PREDICTED: B3 domain-containing protein At5g42700-like
Swissprot	Q9FMZ4	1e-73	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2P5ASS8	2e-95	A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRING	XP_010520114.1	5e-97	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	5e-76	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp1250s0002.2.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]