PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1322s0006.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 142aa    MW: 15308.7 Da    PI: 9.7659
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1322s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.12.3e-1412921998
                NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                          ++P  r+kki+k d+d++++ aea  l+s + ++f+  l+ rs   a e+kr+ +k   + +a +r   + dfl+d  p 
  Kaladp1322s0006.1.p 12 PSFPTGRVKKIMKIDKDINKVNAEALHLISCSTDVFLQFLAERSAAVATEKKRKIVKLEHLRTAAKRHLpTSDFLLDSLPA 92
                         589**********************************************************99998864389*****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-171075IPR009072Histone-fold
PfamPF008083.3E-161375IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.35E-151490IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAENDSDDPI TPSFPTGRVK KIMKIDKDIN KVNAEALHLI SCSTDVFLQF LAERSAAVAT  60
EKKRKIVKLE HLRTAAKRHL PTSDFLLDSL PAPQSLPVVD GPAAEIRARP AEVKPAPAGT  120
RRIDQIFAKS GKEAAGSIIE T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280097.12e-56negative cofactor 2 complex subunit alpha
TrEMBLA0A1R3GQV75e-58A0A1R3GQV7_COCAP; Transcription factor CBF/NF-Y/archaeal histone
STRINGGorai.005G168300.15e-52(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-33nuclear factor Y, subunit C13