PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0001s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 262aa    MW: 29516 Da    PI: 9.7647
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0001s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33.1e-161051243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i n+s r+ t+ kR+ g++KK +ELS+LC+++++ ii+s+ 
  Kalax.0001s0020.1.p 10 FIANNSARKATYKKRKRGLIKKVNELSTLCGVDACAIIYSPY 51
                         799*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.37E-23185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.021149IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-21160IPR002100Transcription factor, MADS-box
CDDcd002661.02E-31386No hitNo description
PRINTSPR004048.4E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRRQKFKLAF IANNSARKAT YKKRKRGLIK KVNELSTLCG VDACAIIYSP YETHPVVWPP  60
SAIGVQRVLS QFTRMPEMEQ SKTKVNQETF LRHRIVKTKE QLKKQVKDNR EEEMTEVMFQ  120
CLTGKDMMNL SMTDLNDITW LVDHYLREIN KKCEKLKNSG GNAGPANVVG ADPMLEEIKP  180
LILNVNPNVS TGFNPSVAAD GMQSSTWLAG GFVNNYGASF SYNSNQLQGR PGIANDIMQG  240
QPQFNMGGMT WLNCPNYFYN M*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.15e-71PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-58AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU31e-69A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGPOPTR_0005s00420.13e-70(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]