PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0001s0108.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 276aa    MW: 29943.1 Da    PI: 6.0958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0001s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13208253655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l+P+     +k  + a++L +AveY+k+Lq
  Kalax.0001s0108.1.p 208 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLDEAVEYVKYLQ 253
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16205263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-13206257No hitNo description
Gene3DG3DSA:4.10.280.104.7E-17207266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MQPTPGGSSS SSGDGGLSRG RLARFRSAPA SWLEALLEDD DEGEGVDDSL EALKPTETLT  60
QLLSSSNPIT SSPAVSSLRN SCGVDVAGAD PGLFEPSNAA FLRQNSSPAD LFAGGYDGPF  120
SNYSMSSAGY DYLSTPPPTP AKRLRDHPNS QHQHYSATFS AQLKGEQSSG HLQGGVSSYL  180
DLDMDKLLED SVPCRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQDLVP NMDKQTNTAD  240
MLDEAVEYVK YLQKQIQELT EHQKNCKCSS KEQHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018856439.14e-90PREDICTED: transcription factor bHLH80-like isoform X2
SwissprotQ9C8P84e-79BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2I4HJU98e-89A0A2I4HJU9_JUGRE; transcription factor bHLH80-like isoform X2
STRINGXP_006473253.12e-86(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-69bHLH family protein