PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0001s0195.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 715aa    MW: 79040.1 Da    PI: 8.3556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0001s0195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.3e-172777656
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++t++q++ Le++F+++ +p++++ ++++++l+L+ rq+k+WFqN+R+++k
  Kalax.0001s0195.1.p 27 RHTPQQIQYLETFFKECAHPDEKQQKQISSQLRLEPRQIKFWFQNKRTQMK 77
                         689*********************************************999 PP
2START119.44.8e-382204413206
                          HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          a  a++el+k   +++p+W+      s+n+d + + f + +        + e +++s  vd  +  lv+ lld +  W   ++    +a 
  Kalax.0001s0195.1.p 220 AVGAMDELLKVLRSDKPLWTNNNgrYSLNRDCYEKVFLRPHHykrnisAKLESSKDSCDVDLSAIVLVNMLLDPN-MWLDLFPtlvtSAR 308
                          66799***************99998788888888888776668889999999***********999999999999.88888888888*** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          tl v+++g      g l+l    + alsplv+ R+f+f+Ry++q + ++wvi+dvS   ++++  +  v  + +lpSg++i+++++ghsk
  Kalax.0001s0195.1.p 309 TLHVVQTGmpgnrsGSLHLNHEIMHALSPLVApREFYFLRYCQQVEIDTWVIADVSYGIPREND-ENLVSNCLKLPSGCMIQDMPDGHSK 397
                          *******************************99******************************9.79999******************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          vtwve v+++++   h  +r +v sgl++ga +w atl++ ce+
  Kalax.0001s0195.1.p 398 VTWVELVEVNDKAStHRFYRDIVTSGLVFGAERWIATLKQMCER 441
                          *********999888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-161273IPR009057Homeodomain-like
SuperFamilySSF466892.74E-161685IPR009057Homeodomain-like
PROSITE profilePS5007115.5481979IPR001356Homeobox domain
SMARTSM003896.7E-132183IPR001356Homeobox domain
CDDcd000861.29E-142779No hitNo description
PfamPF000464.8E-152777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084839.011209444IPR002913START domain
SuperFamilySSF559611.35E-26211441No hitNo description
CDDcd088755.31E-87213440No hitNo description
SMARTSM002341.7E-18218441IPR002913START domain
PfamPF018521.7E-29222441IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-6276439IPR023393START-like domain
SuperFamilySSF559611.22E-7494687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDSGGANATG VDLKGTGSNR SNKNCNRHTP QQIQYLETFF KECAHPDEKQ QKQISSQLRL  60
EPRQIKFWFQ NKRTQMKTQL ERADNNSLRC QNERFKSENL AMRDALKNIL CPSCGGPPFG  120
KDEHRSNIEK LQLENAILRK EYERVATEVA NLTGKPISEV NSWVCTRSSI DFTTGGVSNS  180
CMGMRGTALD LGSSSNITSS AIYKSETISD VEKSVMVETA VGAMDELLKV LRSDKPLWTN  240
NNGRYSLNRD CYEKVFLRPH HYKRNISAKL ESSKDSCDVD LSAIVLVNML LDPNMWLDLF  300
PTLVTSARTL HVVQTGMPGN RSGSLHLNHE IMHALSPLVA PREFYFLRYC QQVEIDTWVI  360
ADVSYGIPRE NDENLVSNCL KLPSGCMIQD MPDGHSKVTW VELVEVNDKA STHRFYRDIV  420
TSGLVFGAER WIATLKQMCE RAVLSNGVPA NKLGATLSAE GKRSVMDLSH RMVKTFCATL  480
NMPINKLDFG HVSETNNSGV RVSTRPCTDP NKPQGMVVCM ATSIWLPLCP QHVFAFFQDN  540
NMRSQWDFLS HGNPLKEIAR AVSGRHTGNN ISIFQPVAHG KSHTVILQES LVDFLGYYLI  600
FAPLESTAVK MVVAGLNSSN TPVLPSGFVI VGDGRGVSTK DVNKTSSGKD SGSLLTVAFQ  660
MLLSGTTYTK QKHMEVVADA NRLISSTVEK IKASLTPSGS SKTVTPSESI CAPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021643520.10.0homeobox-leucine zipper protein ROC8-like
TrEMBLD7TA280.0D7TA28_VITVI; Uncharacterized protein
STRINGVIT_04s0079g00480.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11