PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0118.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 238aa    MW: 24488.4 Da    PI: 7.1002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0118.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036126148123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k F++   L  H r+H
  Kalax.0002s0118.1.p 126 HECAICHKQFPTGQALGGHKRRH 148
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-77294No hitNo description
SMARTSM003550.027294IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-137296IPR007087Zinc finger, C2H2
PROSITE profilePS501579.397294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-7121148No hitNo description
PfamPF139121.3E-12125150IPR007087Zinc finger, C2H2
SMARTSM003550.3126148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974126148IPR007087Zinc finger, C2H2
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGLVSSLLAL DQADVDLARS LMMLASGVVD EETVGEVKVG GGGGGGGGCL EVKDSVSMSA  60
VETESTVKTA SYRCTVCDKE FGSYQALGGH KASHRKLPAS GVSFDTVAAA SGVGGGGSGS  120
GNGRVHECAI CHKQFPTGQA LGGHKRRHYE GVLGKQNQHI NHLQSLKNAT TSSGVTTATT  180
SDGAGSSLSH RGFDLNIPAL PDLWPVSRFA AAEEEVESPH PARKPRVFLP NDVHIRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621070.15e-49PREDICTED: zinc finger protein ZAT10-like
RefseqXP_016490511.15e-49PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1S4BNP01e-47A0A1S4BNP0_TOBAC; zinc finger protein ZAT10-like
TrEMBLA0A2Z7DC307e-48A0A2Z7DC30_9LAMI; Uncharacterized protein
STRINGXP_009621070.12e-48(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-32salt tolerance zinc finger