PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0259.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 191aa    MW: 20423.9 Da    PI: 5.3159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-171262155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrdp++   + r++lg+f++ae+Aa+a++ a+ +++g
  Kalax.0002s0259.1.p 12 TRIRGVRKRP-WGRFAAEIRDPVK---KVRVWLGNFDSAEDAARAYDVAAISFRG 62
                         579*******.**********644...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.39E-311272No hitNo description
PfamPF008475.5E-111262IPR001471AP2/ERF domain
PROSITE profilePS5103223.1431370IPR001471AP2/ERF domain
SMARTSM003806.4E-351376IPR001471AP2/ERF domain
PRINTSPR003671.2E-81425IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-211472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-291571IPR001471AP2/ERF domain
PRINTSPR003671.2E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVPVAASDKP ETRIRGVRKR PWGRFAAEIR DPVKKVRVWL GNFDSAEDAA RAYDVAAISF  60
RGSRAKTNFP SSIPSPPAHP FYESEGFVMQ PQRAASSGMS STVESFIGHR SSNPGLVTAR  120
RPASVPNAVR EEGDCRSDCD SSSTMIDYGD GAVDGDVSCS KVVLPFDLNM PPPADADLEG  180
YDLIATALCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-211575768ATERF1
3gcc_A5e-211575768ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020694474.11e-44ethylene-responsive transcription factor 3
SwissprotQ9FE672e-27ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0V0HV088e-46A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGGorai.002G092900.12e-40(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-21ethylene response factor 8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]