PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0329.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 524aa    MW: 57087.4 Da    PI: 8.5495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0329.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05628123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Kalax.0002s0329.2.p  6 FICEVCNKGFQREQNLQLHRRGH 28
                         89*******************88 PP
2zf-C2H2120.0006283105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Kalax.0002s0329.2.p  83 WKCDKCSKKYAVQSDWKAHSKTC 105
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.28E-8528No hitNo description
Gene3DG3DSA:3.30.160.605.7E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.281629IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551904878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.28E-878103No hitNo description
SMARTSM0035515083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHSL PWKLKQKSSK EVARKKVYLC PEPSCVHHDP  60
ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTKEY RCDCGTLFSR  120
RDSFMTHRAF CEALAQENAM NPTNLSAITS QLFGHSLVAA NQISPHHQEL NFHKHSMQHS  180
DNLPAARSNG DGFRSFGSLL PPLNGSAFRP ISTDIVFGSS SYHQDDQDHH SPNKVFMTGM  240
MQQLPQDQIP SDHTDHSFFS NIASKNDSES PTNNDSISIS HLSSSNLFAN RFSTSGGIGG  300
SFNSAQGPTS GLFSGNTIMG DQISPSLYSS AVSLQNSNNA SASAHLSATA LLQKAAQVGS  360
SCSINGSSAL LRSLGSSLSG PSSKLDLQAS PRAIDFKALL GDKDDKNLHE MISSLGGGGS  420
TTTSSMFGSL AKGLTGYNDE HQENSNSLCS TKLSFGKLLE EEYSKEQPQN VFNDTLTRDF  480
LGVGQIVRQL SGGFSQYDMM QLQQGHQVSS KTSIREGREF GRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3279139363Zinc finger protein JACKDAW
5b3h_F2e-3279139363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13245KLKQKSSKEVARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.11e-128protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.11e-128protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2R6RE721e-124A0A2R6RE72_ACTCH; Protein indeterminate-domain 4 like
STRINGVIT_01s0010g02100.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-84indeterminate(ID)-domain 5