PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0330.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 609aa    MW: 66100.3 Da    PI: 9.5945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0330.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0002s0330.3.p  82 FICEVCNKGFQREQNLQLHRRGH 104
                          89*******************88 PP
2zf-C2H212.40.00047158180123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Kalax.0002s0330.3.p 158 WKCDKCSKRYAVQSDWKAHSKTC 180
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-781104No hitNo description
PROSITE profilePS5015710.9982104IPR007087Zinc finger, C2H2
PfamPF121713.0E-582104IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005282104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355160123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-7153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MAELRNMAAS HSSSLSFFGA SQDDHQQMMS NQQILQQQNS SAPPQQAATT PQKKRRNLPG  60
NPNPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKSTKEVKR  120
KVYLCPEPTC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA QESSRHPSGL STIGSHLYGT PDQMNLSLNS  240
QLPSAASMLQ PGTNTTRTPK FEHMNHISSY GGQQYPPQTV SSSGFFINDN PSSQGFHQDQ  300
SQHGMSANKQ PLFHGLLQIS DHGQGNNSPT ALSNMFNLGY CAGNNATATN NNGFSSAANI  360
NMAMPESLMR SEDHQVNNVA LGSSNFSSMY NTSTNSLQQA DNMGLAPHMS ATALLQKAAQ  420
MGSTTSANNS SLLRGFASST KSSDRSHPVR NTTTNLVSGN SARGVGENLQ SSSSIMDSGN  480
NHLQSLMNSL ANESSSVFKD GVHGQSGSFM SRMLTGSNNS GDHVHHQKNN MASNNNFGKG  540
IMSSENEHKL TLDFLGVGGM VRSSMSGGFS QRSGEMHQGV VEFNPLGDTD QLKPPAPANL  600
SYAGGKLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33154218367Zinc finger protein JACKDAW
5b3h_F2e-33154218367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A061EG081e-175A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2
TrEMBLA0A2K1YRN51e-175A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGVIT_01s0010g02090.t011e-174(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-125indeterminate(ID)-domain 4