PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0002s0331.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 566aa MW: 62177.2 Da PI: 7.064

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0002s0331.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	456	488	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++ L++++ + +K + a++L++A+ YIk q Kalax.0002s0331.2.p 456 EKISALQQIVSPY-----GKTDTASVLQEAIGYIKFHQ 488 6789999999998.....9****************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-8	456	500	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.23E-4	456	492	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-6	456	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence Send to blast
MADQDCNNIN LLPLALSSSP SSWWDLHHHA TPTPSITSWN NTTAAAAAAS LWENHNHSNS 60 SPCDQEDVSV SVSNHSSLTV DDSSHRLVEP SASSSNNIIG QPTTENNSHL WSQLLLGVGG 120 SQDMHDEMGE NLLKALSLKN FSGGMFEPSA CSDYLKKFDS HQHEKWADTN GDQFRNSNPA 180 TAANSSFTRN FDNTNVGYNG DTNLAENNDD QRSLIKLSSS NLVNSWSIAP PDLSQMTFHH 240 LVPNPCNNNI LPSVDQYLHP DITGDQTKQN LSYQPQLLDM APNSIYDCAS YGVSQTRSGN 300 DHYEESHQVG SSQASLFPKV FINNFESVYG STGGNWRPRE SSIHSQHGFT PSVIDPFNNS 360 RSRSLSKPLL KSLSLLDTRK QQGTNLTNSL INNKSNGRGQ GASANDGKKK RSQEASQSCG 420 SSSRKPKHES NSYNPSTPSS FTKTTTQTPK VKITAEKISA LQQIVSPYGK TDTASVLQEA 480 IGYIKFHQEQ VQLLSNPYLK SNVNKLQEAW GSLDRKYEKG EKNKLKVVDL KSKGLCLVPT 540 SSIPQVYKDN SGPDYWPTYR GCLYR*

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence Send to blast

MADQDCNNIN LLPLALSSSP SSWWDLHHHA TPTPSITSWN NTTAAAAAAS LWENHNHSNS  60
SPCDQEDVSV SVSNHSSLTV DDSSHRLVEP SASSSNNIIG QPTTENNSHL WSQLLLGVGG  120
SQDMHDEMGE NLLKALSLKN FSGGMFEPSA CSDYLKKFDS HQHEKWADTN GDQFRNSNPA  180
TAANSSFTRN FDNTNVGYNG DTNLAENNDD QRSLIKLSSS NLVNSWSIAP PDLSQMTFHH  240
LVPNPCNNNI LPSVDQYLHP DITGDQTKQN LSYQPQLLDM APNSIYDCAS YGVSQTRSGN  300
DHYEESHQVG SSQASLFPKV FINNFESVYG STGGNWRPRE SSIHSQHGFT PSVIDPFNNS  360
RSRSLSKPLL KSLSLLDTRK QQGTNLTNSL INNKSNGRGQ GASANDGKKK RSQEASQSCG  420
SSSRKPKHES NSYNPSTPSS FTKTTTQTPK VKITAEKISA LQQIVSPYGK TDTASVLQEA  480
IGYIKFHQEQ VQLLSNPYLK SNVNKLQEAW GSLDRKYEKG EKNKLKVVDL KSKGLCLVPT  540
SSIPQVYKDN SGPDYWPTYR GCLYR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	2e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0002s0331.2.p