PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0068.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 338aa    MW: 36382.6 Da    PI: 7.3249
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-1290134347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ I+rt    Rt+ q+ s+ qky
  Kalax.0003s0068.1.p  90 PWTEEEHRLFLLGLQKLGKGDWRGISRTYVISRTPTQVASHAQKY 134
                          7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.2E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.75683139IPR017930Myb domain
SuperFamilySSF466898.97E-1784140IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-1886138IPR006447Myb domain, plants
SMARTSM007179.6E-887137IPR001005SANT/Myb domain
PfamPF002494.7E-1090134IPR001005SANT/Myb domain
CDDcd001673.58E-990135No hitNo description
Gene3DG3DSA:1.10.10.609.0E-1090133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKIFGVRL TDGLIRKSAS MGNLTHCAGS NLNGSALAGS  60
PGDAPDHGDG YASEDLAASG SREKKKAGIP WTEEEHRLFL LGLQKLGKGD WRGISRTYVI  120
SRTPTQVASH AQKYFIRQSN VSRRKRRSSL FDIVADESVE MPMETLEENP QNHAESQSSY  180
QLPPVPAPHI PTFPAPEEEN ESMDSATNSN DGDFSLPMPE SAPTYYPVPV IVPAYVSPFF  240
PFSVPYWPDN RSAEMSEATK PHVVLKPTAV QPKSPINVDE LLGMSKLSLG VESKSEAGPS  300
ASPSLSLKLS EGSSRQSAFQ ANPAPGTSAS SNPIRAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468550.11e-142PREDICTED: transcription factor MYB1R1-like isoform X2
SwissprotQ7XC571e-119MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1S3ZVU11e-141A0A1S3ZVU1_TOBAC; transcription factor MYB1R1-like isoform X2
STRINGXP_006477144.11e-141(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-95MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]