PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0189.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 169aa MW: 19471.8 Da PI: 8.8165

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0189.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	40	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++++ +++k+lG+ W++Ia +++ gRt++++k++w+ +l Kalax.0003s0189.1.p 40 RGNMSEEEEDIIQRLHKLLGNI-WSLIAGRLP-GRTDNEIKNYWNLHL 85 89****************99.*****.*********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.18E-20	20	90	IPR009057	Homeodomain-like
PROSITE profile	PS50090	4.379	20	34	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.3E-11	20	46	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.413	35	89	IPR017930	Myb domain
SMART	SM00717	4.5E-15	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	40	85	IPR001005	SANT/Myb domain
CDD	cd00167	4.23E-10	42	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-19	47	86	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
RITINKIVMI QKPSNWSGLN RSGKSCRLRW LNYLKPDIKR GNMSEEEEDI IQRLHKLLGN 60 IWSLIAGRLP GRTDNEIKNY WNLHLKKRVL GETETNNIPS KHKTSRTSYY EKEPTTTNSN 120 NNHECHAGNP NVNQIGDECQ PGNLNANQIN EADNYVEQWL HKDVDILN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	9e-20	7	89	16	105	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261928.1	5e-40	PREDICTED: transcription factor MYB114-like
Swissprot	P81393	5e-35	MYB08_ANTMA; Myb-related protein 308
STRING	XP_010261928.1	2e-39	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	2e-37	myb domain protein 82

Link Out ? help Back to Top
Phytozome	Kalax.0003s0189.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]