PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0190.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 220aa    MW: 25415.3 Da    PI: 7.5433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171864248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +W  eEd++l ++v ++G ++W+ Ia++ g++R++k+c++rw++yl
  Kalax.0003s0190.1.p 18 AAWKLEEDQKLEEYVLKHGAKRWNQIAEKAGLNRSGKSCRLRWLNYL 64
                         58*******************************************97 PP
2Myb_DNA-binding52.61.1e-1670115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +l
  Kalax.0003s0190.1.p  70 RGNMSEDEEDLIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 115
                          89********************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8421264IPR017930Myb domain
SMARTSM007171.9E-141666IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-2817111IPR009057Homeodomain-like
PfamPF002492.3E-161864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231970IPR009057Homeodomain-like
CDDcd001671.02E-101964No hitNo description
PROSITE profilePS5129424.36465119IPR017930Myb domain
SMARTSM007173.2E-1669117IPR001005SANT/Myb domain
PfamPF002497.6E-1570115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2371118IPR009057Homeodomain-like
CDDcd001672.83E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAAGKTRGSS YKEVTSRAAW KLEEDQKLEE YVLKHGAKRW NQIAEKAGLN RSGKSCRLRW  60
LNYLKPGIKR GNMSEDEEDL IKRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNLHLKKRVL  120
GETETNNIPS KHKTSRTSYY EKEPTTTNSN NNHECHAGNT NPNQIYDECQ AGNLNANQIN  180
EADNCFDWSP NISDRSEWVN RLLDLDVEQW LQEDMDIID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070024.12e-62myb-related protein 330 isoform X2
RefseqXP_020534293.12e-63transcription factor TT2
SwissprotQ388502e-46MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A097HUN28e-62A0A097HUN2_JATCU; MYB family protein
STRINGXP_008356551.13e-61(Malus domestica)
STRINGXP_008364573.13e-61(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-49myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]