PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0190.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 202aa    MW: 23354 Da    PI: 6.023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0190.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-175297148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+++++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +l
  Kalax.0003s0190.2.p 52 RGNMSEDEEDLIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 97
                         89********************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.612546IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-103258IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2132102IPR009057Homeodomain-like
PROSITE profilePS5129424.36447101IPR017930Myb domain
SMARTSM007173.2E-165199IPR001005SANT/Myb domain
PfamPF002496.6E-155297IPR001005SANT/Myb domain
CDDcd001672.97E-115497No hitNo description
Gene3DG3DSA:1.10.10.607.0E-205998IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MRYPWQLTDT YFLLLAGCFF CNADGAPFAG LNRSGKSCRL RWLNYLKPGI KRGNMSEDEE  60
DLIKRLHKLL GNRWSLIAGR LPGRTDNEIK NYWNLHLKKR VLGETETNNI PSKHKTSRTS  120
YYEKEPTTTN SNNNHECHAG NTNPNQIYDE CQAGNLNANQ INEADNCFDW SPNISDRSEW  180
VNRLLDLDVE QWLQEDMDII D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-183310140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364573.26e-48transcription repressor MYB5-like
SwissprotQ388504e-36MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A498JTG89e-47A0A498JTG8_MALDO; Uncharacterized protein
STRINGXP_008356551.12e-47(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-38myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]