PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0003s0190.4.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 148aa MW: 17169.8 Da PI: 4.6396

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0003s0190.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	2	43	5	48
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+ +l Kalax.0003s0190.4.p 2 SEDEEDLIKRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 43 89**************.*****.*********9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.513	1	47	IPR017930	Myb domain
CDD	cd00167	7.61E-11	1	43	No hit	No description
SMART	SM00717	9.5E-11	1	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.4E-12	2	48	IPR009057	Homeodomain-like
Pfam	PF00249	7.3E-14	2	43	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	2	44	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSEDEEDLIK RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN LHLKKRVLGE TETNNIPSKH 60 KTSRTSYYEK EPTTTNSNNN HECHAGNTNP NQIYDECQAG NLNANQINEA DNCFDWSPNI 120 SDRSEWVNRL LDLDVEQWLQ EDMDIID*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q38850	1e-20	MYB5_ARATH; Transcription repressor MYB5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-23	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Kalax.0003s0190.4.p

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]