PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0191.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 221aa    MW: 25472.4 Da    PI: 6.9425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0191.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.7e-171965248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +W  eEd++l ++v ++G ++W+ Ia++ g++R++k+c++rw++yl
  Kalax.0003s0191.1.p 19 AAWKLEEDQKLEEYVLKHGAKRWNQIAEKTGLNRSGKSCRLRWLNYL 65
                         58*******************************************97 PP
2Myb_DNA-binding50.45.2e-1671116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ +l
  Kalax.0003s0191.1.p  71 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNLHL 116
                          899*******************.*********.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.991365IPR017930Myb domain
SMARTSM007173.5E-141767IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-2818112IPR009057Homeodomain-like
PfamPF002497.9E-161965IPR001005SANT/Myb domain
CDDcd001671.07E-102065No hitNo description
Gene3DG3DSA:1.10.10.605.9E-232071IPR009057Homeodomain-like
PROSITE profilePS5129423.13766120IPR017930Myb domain
SMARTSM007171.5E-1570118IPR001005SANT/Myb domain
PfamPF002492.5E-1471116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2372119IPR009057Homeodomain-like
CDDcd001678.59E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAGKTRGSS YKELVTSRAA WKLEEDQKLE EYVLKHGAKR WNQIAEKTGL NRSGKSCRLR  60
WLNYLKPGIK RGNMSEDEED LIQRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNLHLKKRV  120
LGEMETNNIP SKHKQTSRTS YYEKEPTTSG HNNHECHAGN PNANQIDDEC QAGNLNANQI  180
NEADNCFDWS PHISDCSEWV NRLLDLDVEQ WLQEDMDILN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261712026128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates the production of a signal that induces hair (trichome) precursor cells on leaf primordia to differentiate. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020534293.12e-60transcription factor TT2
SwissprotQ947R41e-48GL1_ARALY; Trichome differentiation protein GL1
TrEMBLA0A1Q3BY673e-61A0A1Q3BY67_CEPFO; Myb_DNA-binding domain-containing protein
STRINGXP_008356551.14e-59(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-50myb domain protein 5