PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0082.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 111aa    MW: 12607.9 Da    PI: 6.347
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0082.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-0958100145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++r++++E+ l+ + +++ G + W +Ia +++ gRt++++  +w 
  Kalax.0004s0082.1.p  58 KLRFSEDEETLINRMFNLVGQR-WGLIAGRIP-GRTAEEIEKYWT 100
                          78*******************9.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.2E-557105IPR001005SANT/Myb domain
PROSITE profilePS500906.55158103IPR017877Myb-like domain
PfamPF002496.7E-859100IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-860103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1060101IPR009057Homeodomain-like
CDDcd001673.86E-66099No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MYIYSHVRQS PNIYSTKSHL INHTFCSEDP SMAKAEAEAE AEADTSSSTS DTLTGSSKLR  60
FSEDEETLIN RMFNLVGQRW GLIAGRIPGR TAEEIEKYWT SRYYQHSQHK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529738.12e-26MYB-like transcription factor ETC1
RefseqXP_010240919.12e-26PREDICTED: transcription factor CPC-like
TrEMBLA0A1U7YTB05e-25A0A1U7YTB0_NELNU; transcription factor CPC-like
TrEMBLB9SUR94e-25B9SUR9_RICCO; Triptychon and cpc, putative
STRINGXP_002529738.17e-26(Ricinus communis)
STRINGXP_010240919.18e-26(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.14e-18MYB_related family protein