PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0174.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 311aa    MW: 33499.6 Da    PI: 6.5101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0174.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-10158202554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Kalax.0004s0174.1.p 158 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 202
                          99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-15151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-15155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANNHHHQQH QHQHQHHHSE APADDFLEHL LGIPSYATSS DAGLGVNDVS LTGGPQSHMM  60
LQLSSGADGS GHVGQGFNGS VFPLGLSLDQ GKPGGFLKLD EASGSVKQFM EDGGDGRAPA  120
VKNTFHAQPM QNNMPAAPHP PAMRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV  180
PSVNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDIPLS SVEEESGEDG  240
RNQPAWEKWS NDGTEQQVAK LMEENVGAAM QFLQSKALCI MPISLASVIY HTPQPDTSTL  300
VKPEGNPPPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.11e-150transcription factor UNE12 isoform X2
SwissprotO227681e-122UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4DYZ21e-148A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRINGVIT_07s0141g00220.t011e-145(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]