PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0198.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 237aa    MW: 26161.8 Da    PI: 8.8942
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0198.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1356102354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h+e+E+rRR+riNs +++Lr++lP +      K +Ka+ L k+ve +++L
  Kalax.0004s0198.1.p  56 RNHKEAEKRRRERINSHLDKLRSILPCS-----SKTDKASLLAKVVERVREL 102
                          58*************************8.....6*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.61253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-1156102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-1256105No hitNo description
SuperFamilySSF474594.58E-1456117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1357115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-1159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.9E-4146211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLPGASSEKS ELYRIMTGMC STSFDVGSSF LPSDSFDQAF CDSSSESAQR ALAALRNHKE  60
AEKRRRERIN SHLDKLRSIL PCSSKTDKAS LLAKVVERVR ELKQEAAMME QTSRKTESYC  120
LIPSESDEVT VYSSSDDGGR LIFKASLCCE DRSDLMPELI GILKSLRLKT LRAEMCTVGG  180
RIRNVLVVAA DSEHSIESIH FLQSALKGLV QKSSDTSADR SKRRRMAASA ARQLRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028766711.19e-87transcription factor bHLH106
SwissprotO806747e-65BH106_ARATH; Transcription factor bHLH106
TrEMBLB9H8T82e-81B9H8T8_POPTR; BHLH family protein
STRINGPOPTR_0006s03550.13e-82(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]