PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0004s0329.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 213aa MW: 23823 Da PI: 8.6201

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0004s0329.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	182	3.2e-56	20	199	3	161
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....................l 71 + sss+q+Cyv+CnfC+t+lavsvPs slfk+vtvrCGhC++llsvn+ +++++h + ++++ Kalax.0004s0329.1.p 20 HSSSSHQLCYVHCNFCDTVLAVSVPSCSLFKTVTVRCGHCSNLLSVNMGALLvPPQPSSNHQYHPIHNPppslhqeelyvvntvmnnsaA 109 57899**************************************999876634566777655555554799988888888887777763 PP YABBY 72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 +e ++ +e++ + ++ + ++ ++ e+l++ ++++++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afsaaakn Kalax.0004s0329.1.p 110 AESEQEREQEHHRIPTMMQIQQPKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNVP 199 3333333333333444444444444555668888888888899*******************************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-57	23	200	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCNFCDTVLA VSVPSCSLFK TVTVRCGHCS 60 NLLSVNMGAL LVPPQPSSNH QYHPIHNPPP SLHQEELYVV NTVMNNSAAA ESEQEREQEH 120 HRIPTMMQIQ QPKRVDEMLN TFSKQKTSLF ASINKPPEKR QRVPSVYNRF IREEIQRIKA 180 GNPDITHRQA FSAAAKNVPR SSILHLPLLN NT*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315817.1	6e-57	axial regulator YABBY 1-like
Refseq	XP_009375772.1	5e-57	PREDICTED: axial regulator YABBY 1 isoform X1
Refseq	XP_020411971.1	5e-57	axial regulator YABBY 1 isoform X1
Swissprot	Q9XFB1	1e-46	YAB3_ARATH; Axial regulator YABBY 3
TrEMBL	A0A251QFS5	1e-55	A0A251QFS5_PRUPE; Uncharacterized protein
TrEMBL	D9ZJG4	1e-55	D9ZJG4_MALDO; YABBY domain class transcription factor
STRING	XP_009375772.1	2e-56	(Pyrus x bretschneideri)
STRING	XP_008364377.1	2e-56	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	5e-47	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0004s0329.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yadav RK, et al. Plant stem cell maintenance involves direct transcriptional repression of differentiation program. Mol. Syst. Biol., 2013. 9: p. 654 [PMID:23549482]