PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0329.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family YABBY
Protein Properties Length: 156aa    MW: 17873.4 Da    PI: 10.5241
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0329.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY132.16.9e-41813737170
                YABBY  37 vrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvP 126
                          v C h  s  s +    +  ++++s+ + +++++  e+++ +e++   ++++ +++++    e+l++ ++++++    +++PPekrqrvP
  Kalax.0004s0329.2.p   8 VVCQHGRSSCSSTA-IIKSSVSSHSQ-SSAFTPPESEQEREQEHHRIPTMMQIQQPKR--VDEMLNTFSKQKTSLFASINKPPEKRQRVP 93 
                          55666655555222.22223333333.3445555444444444433333333333333..333566777777777789************ PP

                YABBY 127 saynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          s ynrfi+eeiqrika+nPdi+hr+afsaaaknWa+fP+ihfgl
  Kalax.0004s0329.2.p  94 SVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNWAYFPHIHFGL 137
                          ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-3734137IPR006780YABBY protein
SuperFamilySSF470959.03E-780130IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MWPLLQSVVC QHGRSSCSST AIIKSSVSSH SQSSAFTPPE SEQEREQEHH RIPTMMQIQQ  60
PKRVDEMLNT FSKQKTSLFA SINKPPEKRQ RVPSVYNRFI REEIQRIKAG NPDITHRQAF  120
SAAAKNWAYF PHIHFGLMPE ELHQPVTKKP NLLSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335074.11e-35axial regulator YABBY 1 isoform X1
RefseqXP_027335075.11e-35axial regulator YABBY 1 isoform X2
TrEMBLA0A1Q3BV984e-35A0A1Q3BV98_CEPFO; YABBY domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-35YABBY family protein