PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0004s0329.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family YABBY
Protein Properties Length: 161aa    MW: 18555.1 Da    PI: 10.0016
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0004s0329.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY127.22.3e-394014265170
                YABBY  65 eslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafs 154
                          +s   e  +e+++e++ + ++++ ++    ++  e+l++ ++++++    +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afs
  Kalax.0004s0329.3.p  40 NSAAAESEQEREQEHHRIPTMMQIQQ---PKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFS 126
                          33333344444444444444333333...334445667777777777789**************************************** PP

                YABBY 155 aaaknWahfPkihfgl 170
                          aaaknWa+fP+ihfgl
  Kalax.0004s0329.3.p 127 AAAKNWAYFPHIHFGL 142
                          **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-3644142IPR006780YABBY protein
SuperFamilySSF470959.56E-785135IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGALLVPPQP SSNHQYHPIH NPPPSLHQEE LYVVNTVMNN SAAAESEQER EQEHHRIPTM  60
MQIQQPKRVD EMLNTFSKQK TSLFASINKP PEKRQRVPSV YNRFIREEIQ RIKAGNPDIT  120
HRQAFSAAAK NWAYFPHIHF GLMPEELHQP VTKKPNLLSR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315817.12e-36axial regulator YABBY 1-like
TrEMBLD9ZJG44e-35D9ZJG4_MALDO; YABBY domain class transcription factor
STRINGXP_008364377.17e-36(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-35YABBY family protein