PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0032.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 323aa    MW: 37417.8 Da    PI: 5.2087
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.65.2e-30391322101
                          HHHHHHHHHCTGGGTTTSEESSSS..SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkeliswseng..nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                          Fl k+y++++d+++++++sws+++  +sfv++d+++f++++Lp+yFkh+nf+ F+RQLn YgFkkv+ ++         weF++  F +g
  Kalax.0005s0032.1.p  39 FLAKTYHLVDDPSTDQVVSWSQDSssSSFVIWDPRTFSSTILPTYFKHTNFSNFIRQLNSYGFKKVNPDR---------WEFANAGFIRG 119
                          9********************5543499***************************************999.........*********** PP

                          XXXXXXX.XXXXX CS
         HSF_DNA-bind  90 kkellek.ikrkk 101
                          + +l+++ +kr++
  Kalax.0005s0032.1.p 120 HGHLMRNsMKRRA 132
                          ***9987577775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-3430124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.01E-2834127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-4735131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-183962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2639126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNPAREAVAV EEGSASNSVE PSDRAQAAER VHESQPPPFL AKTYHLVDDP STDQVVSWSQ  60
DSSSSSFVIW DPRTFSSTIL PTYFKHTNFS NFIRQLNSYG FKKVNPDRWE FANAGFIRGH  120
GHLMRNSMKR RARQMESSDV DPCPKFEEPG FDTEVHRLRR DRQILMTELV KLRQLQKTTK  180
AHIRSMEQRL RKTELKQQQT TRFLAKAIRN PDFMQRFSGA KDTREEDEHL LSTEMRSTEE  240
EPGALCGFTE KEIQDYVDIS DYEVSDVVIW EKENVLPVAE KGEHDQEQLV GEFLNDWIKE  300
ELRQVNVEMI CFEEVPHSSQ TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-183413215121Heat shock factor protein 1
5hdg_A1e-18371328111Heat shock factor protein 1
5hdn_A1e-18371328111Heat shock factor protein 1
5hdn_B1e-18371328111Heat shock factor protein 1
5hdn_C1e-18371328111Heat shock factor protein 1
5hdn_D1e-18371328111Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364390.17e-83heat stress transcription factor A-6b-like
TrEMBLA0A061EL963e-79A0A061EL96_THECC; Heat stress transcription factor A-6b, putative
STRINGEOY057905e-80(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-65heat shock transcription factor A6B