PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 745aa    MW: 80697.1 Da    PI: 6.5381
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.67.8e-16446484240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C  +C C++C+Nk 
  Kalax.0005s0038.1.p 446 SCKRCNCKKSKCLKLYCECFAAGVYCIGTCACQNCFNKP 484
                          689**********************************96 PP
2TCR49.49.3e-16531569139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Kalax.0005s0038.1.p 531 RHKRGCNCKKSSCLKKYCECYQGGVGCSVNCRCESCKNV 569
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.4E-16445486IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.889446571IPR005172CRC domain
PfamPF036382.6E-11448483IPR005172CRC domain
SMARTSM011142.5E-15531572IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-11533568IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MDTPERNQIG SSLSKHEDSP VFNYLSNLSP IKPMKSAPIT QTFTTLNFSS LPSIFTSPHV  60
SSHKESRFLL RRHNTPDKSQ SEFSYIDVSS NKENDVFVDV NQLHNCSSEL QKVSDTLDSI  120
GRAPLEPLHE ESDLSIDLSH NLKNDCGSPD SEGKAARDEA SQSAEAATSA VMLDQGPSVS  180
LPAVHETPSG WESLISDGAD LLMFDSPNIA AGLKELFKSP PVEHMGSSFA SQFHQDTPDF  240
LKSDPAFLVD IGELQNETYH HAETEVIDCA RDDFPSTMTG CMTSHPSENV DDESMMSLHR  300
GVRRRCLVFD TKGAQRKSLI GASSSNPSMC MNDNKKRDAS KIGGSSALRI LPGIGLHLNA  360
LATSGDRGGG QVSVSSSATT FQSPATAHES VLDVFSGASS QENADSGIIQ CSEDACLAPG  420
LVSLDDINQN SPRKKRRKPE SSGDESCKRC NCKKSKCLKL YCECFAAGVY CIGTCACQNC  480
FNKPVHEDTV LATRKQIESR NPLAFAPKVI RTSDPLPDIK DEVMNTPASA RHKRGCNCKK  540
SSCLKKYCEC YQGGVGCSVN CRCESCKNVF GTKDGSAPVA VATQDGDEEE ETEKVEMNNK  600
GLQSVMPHNN EEHNPNTFPA TPLRLTRMSM QLPFSSKGKP PRSSFLAVDS ASGLQASQKF  660
SKPNYANPPP KFQRNYPAGQ DETEMPEMLR NNGSPISAVK TSSPNSKRVS SPHSNFGSSP  720
ARRSTRKLIL QSIPSFPSLT QPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1645056914121Protein lin-54 homolog
5fd3_B1e-1645056914121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431438PRKKRRKP
2433437KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818657.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBLA0A2P5E3850.0A0A2P5E385_PARAD; Lin-54-like protein
STRINGVIT_05s0020g03880.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-116Tesmin/TSO1-like CXC domain-containing protein