PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0005s0050.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 80aa MW: 9050.42 Da PI: 9.8389

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0005s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	2.1e-10	3	50	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT E +l+ +a + + + +W++ a +g+++t+ q+k+++ k+ Kalax.0005s0050.1.p 3 SWTSKENKLFENALQIYTEDtpeRWEKLAGALGNTKTAQQVKLHYEKL 50 6********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.4E-5	1	53	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	9.473	1	55	IPR017884	SANT domain
Pfam	PF00249	2.8E-8	3	50	IPR001005	SANT/Myb domain
CDD	cd00167	3.70E-5	3	51	No hit	No description
SuperFamily	SSF46689	1.08E-11	3	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-5	3	51	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MASWTSKENK LFENALQIYT EDTPERWEKL AGALGNTKTA QQVKLHYEKL VEDIMAIERG 60 AIPLPKYKKN PSKSNRMVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-18	4	68	11	74	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022869684.1	1e-27	protein RADIALIS-like 3
Swissprot	Q1A173	4e-21	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A444YWT7	9e-24	A0A444YWT7_ARAHY; Uncharacterized protein
STRING	XP_009586717.1	4e-24	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	2e-23	RAD-like 6

Link Out ? help Back to Top
Phytozome	Kalax.0005s0050.1.p