PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0055.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 336aa    MW: 37593.2 Da    PI: 8.6214
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.42.6e-31102158259
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          ++vrY+eClkNhAas+G+++vDGCgEfmp  g+egt +alkCaAC CHRnFHRre e 
  Kalax.0005s0055.1.p 102 SGVRYRECLKNHAASMGTNVVDGCGEFMPG-GKEGTLEALKCAACHCHRNFHRRELEG 158
                          579**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.9E-29104156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-20104158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.1E-29105155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.802106155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-29225294IPR009057Homeodomain-like
SuperFamilySSF466896.28E-19226294IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27233289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEQPQYHHQL KLSQQQHHTT TPSPPRNLPP PPPLPSLAYP PSSIQQPSLP TSEADDVEDK  60
KNGVLPHVAS AGMYGGGGGE LQSPESLAGT RSKAVKSGSP SSGVRYRECL KNHAASMGTN  120
VVDGCGEFMP GGKEGTLEAL KCAACHCHRN FHRRELEGHD SGSGNFARSV IVHPLHLPPQ  180
TQIPFRHPHH HRHRIVQPVA VAYGGGATES SSEDLVQVFD EMPQREIEPG SGRKRFRTKF  240
TQEQKDKMLG FAERLGWRLQ RQDDEMVAKF CNEVGIRRQV LKVWMHNNKS SFKKPPVDED  300
QHQQQPTHPQ IQLHPQHHHL LHLHHQHQQK QQETL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-252342911875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022951673.12e-73zinc-finger homeodomain protein 2-like
SwissprotO647222e-60ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2P6PYR52e-70A0A2P6PYR5_ROSCH; Putative transcription factor ZF-HD family
STRINGXP_004165400.12e-69(Cucumis sativus)
STRINGcassava4.1_022551m2e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-61homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]