PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0141.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 337aa    MW: 36479.6 Da    PI: 4.5854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10144188655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ErrRR r+++ +  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  Kalax.0005s0141.1.p 144 IVSERRRRGRMKDNLYALRSLVPNI-----TKMDKASIVGDAVLYVQNLQ 188
                          568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.767138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-15139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.51E-12140188No hitNo description
Gene3DG3DSA:4.10.280.104.3E-15140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRCDNEASTN PVVADCDIGY VDASHQQQQQ QQRVMIEDDE VDRLMSVEIE SQFHNEHGEL  60
AMDIPQISMD LFAFGGDDDG DVDYGLCGDH VNGFSGDSLA GIVDDFDVGD GLDDEDDNDG  120
NASSGTTTTT ATPKKGKADR SKTIVSERRR RGRMKDNLYA LRSLVPNITK MDKASIVGDA  180
VLYVQNLQVT AERLKLDIAE LEASTASLGL NATNPSLTSN NNNNDVRCST TPAAAPPPRY  240
IKQMDVFHVG GRDFYAKLVS NQGLEIAARL HKAIESLRNG LSVRSSNLST VVDHYVLTFT  300
LHVREGGGEG EIKLPNLKMC LSRALAGQGF ILKSSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125764.13e-58LOW QUALITY PROTEIN: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A068UEV43e-57A0A068UEV4_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-49FER-like regulator of iron uptake