PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0005s0142.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 284aa MW: 30211 Da PI: 8.2791

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0005s0142.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00094	115	135	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C+ C+k+F++ L H Kalax.0005s0142.1.p 115 YECKTCSKTFPSFQALGGHRA 135 99*********9888877765 PP
2	zf-C2H2	14.2	0.00013	189	211	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kalax.0005s0142.1.p 189 HRCSICGSEFSSGQALGGHMRRH 211 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.6E-8	114	137	No hit	No description
Pfam	PF13912	3.0E-10	115	137	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.138	115	142	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.29	115	137	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.6E-8	184	211	No hit	No description
Pfam	PF13912	2.1E-11	188	213	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	189	211	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.681	189	211	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	191	211	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MFFFIYINAM KQSKLLSKNR ASLQTHNTLI IAMELPVDEV AAAAAVPGAL QNISKGKRTK 60 RSSGIASDEE EDRRSYDSVV TGEEQDLANC LILLARAEVV VGAKRRIDDV MGGCYECKTC 120 SKTFPSFQAL GGHRAGHGKP KSHIDDCDFA PSSSSNCSVS PQPPTPPTTA ANRNDVVVAK 180 SSTRPSKAHR CSICGSEFSS GQALGGHMRR HRAVPVPNRS PSAGPSSMGS GGASSLEAKT 240 RSFLSLDLNL PAPEDGEISQ CQQNAAFHQQ ETHAFHALLG CHY*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-35	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0005s0142.1.p