PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0202.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 341aa    MW: 37984.4 Da    PI: 4.6861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13102147247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+ +++ + + lG+g+W+ I+rt  +++t  q+ s+ qky
  Kalax.0005s0202.1.p 102 SKWTEDEHRRFLAGLQALGKGDWRGISRTYVLTKTSSQVASHAQKY 147
                          58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.4E-51264IPR001005SANT/Myb domain
PROSITE profilePS500905.8311562IPR017877Myb-like domain
CDDcd001671.83E-61562No hitNo description
SuperFamilySSF466891.72E-71567IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-51662IPR009057Homeodomain-like
PROSITE profilePS5129414.37993152IPR017930Myb domain
SuperFamilySSF466891.42E-1497153IPR009057Homeodomain-like
SMARTSM007171.8E-6100150IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.7E-17102151IPR006447Myb domain, plants
PfamPF002494.3E-9102147IPR001005SANT/Myb domain
CDDcd001671.29E-7103148No hitNo description
Gene3DG3DSA:1.10.10.601.6E-7103147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MESQLDPQAP APAASWTRAD DKKFESLLVE FPEGCANRFE SVASRLPGRS VDEVVKRYED  60
LVADVEAIEA GLFPRPKHGG GDRRNEGSHL QKAPTQRKNT SSKWTEDEHR RFLAGLQALG  120
KGDWRGISRT YVLTKTSSQV ASHAQKYFMR QSKEGQKSKR RNSIHDVSLS SSEDDNNFRN  180
NPMQQLHEVQ VQQESVIIPR SQFAGPEDPL MDDVDWTSYM QQSVGASPYS QLVGLELSDD  240
GQQRADQPQA IQPQDADAAH NLHPQQLSVD SLIMTQQQQQ QPSAAIQSEH QDGDGTVQSQ  300
QQDGDDATDH GDQPFPSFDH LDENVLKKHE DLLADVFSDS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-43Homeodomain-like transcriptional regulator