PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0281.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 496aa    MW: 54585.9 Da    PI: 6.239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0281.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09331377354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          +++ e+ErrRR+ri+++ ++Lr l+P+ +      K++ a+i   A+ YI +L
  Kalax.0005s0281.2.p 331 AKNLEVERRRRSRIKDGEFQLRALVPNiS------KMDRASIIGDAITYIIEL 377
                          56779**********************66......***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-1149185IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.68E-11326381No hitNo description
SuperFamilySSF474592.22E-14328390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.935328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7330377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-14332391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MATGVDHAKC HFQSFLGSLS GGEMFEFGVG EMETAVREIR GLERVVEWLR PFVEQHGWDY  60
CVVWKSGGDP SRYVEFVDCC CAGGYVSGDV KLEKSGDQNG VASPVCRDVH VEHPIRTKAC  120
ETLAQIPAAL PLYSGIHSDV AITNQPNWLS EDDRTLVLIP LGGGLIELFA AKLVEKDQTT  180
IDFIRYQYTV SLEHDALLNH LNPNVDQVVH ETELGHCLQN SSPGVLFIDT APKLQTGVPL  240
KKPQTRASFP GSSTGSNPPN ENPSMDSSFG HLSQDASLPP SSSNSPCSKK PKLCENFSKA  300
QLGAASAPGT IVFEKGNPKF GHKPGKEGSK AKNLEVERRR RSRIKDGEFQ LRALVPNISK  360
MDRASIIGDA ITYIIELKKT VQELEQELKE EDDENVDPSV ELSGKQKAGI KFKRGILDAD  420
LRSYSEMQVE VHQICGRTFL LRVVAEQQPC WSSRLMQAMS SLGLHVEDAN INTCHGLVLC  480
NFRVEVNRKT NLQLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-41bHLH family protein