PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0006.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 549aa    MW: 60866.8 Da    PI: 5.2744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0006.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.2e-073573911655
                          HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +N++f+ L++l+P++      K +K++ L  ++ Y+k+L+
  Kalax.0006s0006.4.p 357 LNERFSALQSLIPSN-----DKADKVTLLDATISYLKELE 391
                          8*************8.....7****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-354129IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088811.211341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-5345396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-10356407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-11357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.84E-7357395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MFNSKRSDQL RELYESLVAG ESNSQARRPS TALSPEDLTD AEWYYLVCMS FVFNIGQGLP  60
GRTFEVGQPI WLCNAHLAES QVFVRSLLAK SASIQTVVCF PFSGGVVEIG ITELVPEDMN  120
LIERIKALFL DNFRPQSTVP DTSFPSGLLN YDMELAGVEP DHDYPEANLD PIVECKELDS  180
LSTYDSASNV AADQLADSFM LTDGASQVQS WHFADEDFSN CVHHSFNSSN CISQTFALSA  240
KARLSPKIEN LCEHHIPCPM ERTKLESPDD LHYQGVISTL LKNSDLLDLD PRIGCCKKGS  300
SFVKWSRVGR AGSSWSSNSM SQVMLRKVLF EVGRNTGCAP VDRTEAVDRY EHSLDVLNER  360
FSALQSLIPS NDKADKVTLL DATISYLKEL EKRVEKLESS KESTYLLNTP MATKPQVTVE  420
RTSDNYGNGT NRTSNKNKPS TNKRKASYID QVEPQNIAKT SRDNSTDVIC VSMVDNNVMI  480
EMRCCWRECL LFKVMDAMSG LGLDSHMVQS STSANGILQL TIKSKFKGSG CPSVGVIRQK  540
LQRILAQS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040249.21e-172PREDICTED: transcription factor EGL1
TrEMBLA0A061G5B21e-171A0A061G5B2_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 3 (Fragment)
STRINGEOY247501e-172(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-118bHLH family protein