PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0006s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 346aa MW: 38008.3 Da PI: 6.7262

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0006s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29	2.3e-09	150	198	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Kalax.0006s0018.1.p 150 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATSLSAQLTLFQ 198 9****************************************98887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-16	146	210	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	148	211	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-8	150	195	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.7E-8	150	203	No hit	No description
SuperFamily	SSF57959	2.39E-10	150	202	No hit	No description
CDD	cd14703	7.97E-24	151	200	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MQDPRAAQMP PKPSPVSSAS SPFANSPIPL RGSHHRRAHS EASFRVPGNL DLVSSDPYDA 60 PDGGFDKMGS EDDLFCTYMN MDNFSAGDAK FDGGLRIGNG EGSEEGKDGS GLRHHRHSNS 120 VDGSDTVECI EAKKAMAPDK LAELWNVDPK RAKRILANRQ SAARSKERKA RYILELERKV 180 QTLQTEATSL SAQLTLFQRD TMGLTAENTE LKIRLQTLEQ QAHLRDALNE SLKKEVERLK 240 TATGETISSS DDYNLGMHHI LYNQPSFPLP QHYPVPSDPH IIHMSHLQSR MAAHDRPHPT 300 AQSHGFSEMS QQDSLSRLQG LDINGRGPII VKTEGPSLSV SESSS*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MQDPRAAQMP PKPSPVSSAS SPFANSPIPL RGSHHRRAHS EASFRVPGNL DLVSSDPYDA  60
PDGGFDKMGS EDDLFCTYMN MDNFSAGDAK FDGGLRIGNG EGSEEGKDGS GLRHHRHSNS  120
VDGSDTVECI EAKKAMAPDK LAELWNVDPK RAKRILANRQ SAARSKERKA RYILELERKV  180
QTLQTEATSL SAQLTLFQRD TMGLTAENTE LKIRLQTLEQ QAHLRDALNE SLKKEVERLK  240
TATGETISSS DDYNLGMHHI LYNQPSFPLP QHYPVPSDPH IIHMSHLQSR MAAHDRPHPT  300
AQSHGFSEMS QQDSLSRLQG LDINGRGPII VKTEGPSLSV SESSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002280180.1	1e-135	PREDICTED: transcription factor RF2b isoform X1
Swissprot	O22873	1e-107	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	F6HC81	1e-134	F6HC81_VITVI; Uncharacterized protein
STRING	VIT_13s0067g02900.t01	1e-135	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-101	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0006s0018.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]