PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0081.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 255aa    MW: 27773.7 Da    PI: 6.634
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-191661147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W +eEd+ll ++v+++G+++W+tIa+ ++ gRt+k+c++rw++ 
  Kalax.0006s0081.1.p 16 RGHWRPEEDQLLRNLVERFGPKNWNTIAEQIQ-GRTGKSCRLRWFNQ 61
                         899*****************************.***********996 PP
2Myb_DNA-binding51.72e-1668111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++++T+eE+ +l+ a + +G++ W++Iar+++ gRt++ +k++++ 
  Kalax.0006s0081.1.p  68 KLSFTEEEETRLILAQRAHGNK-WSAIARHFP-GRTDNAVKNHFHV 111
                          689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.6331166IPR017930Myb domain
SMARTSM007172.4E-151564IPR001005SANT/Myb domain
PfamPF002492.6E-181661IPR001005SANT/Myb domain
SuperFamilySSF466893.48E-2916109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-261769IPR009057Homeodomain-like
CDDcd001672.33E-151960No hitNo description
PROSITE profilePS5129417.05467117IPR017930Myb domain
SMARTSM007174.7E-1367115IPR001005SANT/Myb domain
PfamPF002491.3E-1369110IPR001005SANT/Myb domain
CDDcd001672.45E-1170110No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1970116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEGHEGDNDN QGATSRGHWR PEEDQLLRNL VERFGPKNWN TIAEQIQGRT GKSCRLRWFN  60
QLDPNLNKLS FTEEEETRLI LAQRAHGNKW SAIARHFPGR TDNAVKNHFH VIMGRKRKDP  120
NISLPSFTPT LVGGYNIGAP VGPSGMIYEP TFPKYAGSNS FIPGTQNPYP FNFGDIDGSN  180
LIGNAPVALD GNAAYSNFNA GAAGGPFGYS GFRSVPGMVG DSSQATNINV AQNEDANPPF  240
IDFLGVESKN QADH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-30161164104MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-301611658158MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-301611658158MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-30161164104C-Myb DNA-Binding Domain
1msf_C1e-30161164104C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-55myb domain protein 105