PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0086.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 286aa    MW: 32650.8 Da    PI: 9.5504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.12.6e-2231125190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                          +fY+eYA+++GF++rk++skk +r++++  + ++C+++g++ +++ +     ++   r+ra+trtgC+a+++ k+ +++ ++v+++ +eH
  Kalax.0006s0086.1.p  31 SFYKEYARQCGFQIRKATSKKASRSEKVNLQYMYCNRQGFNISKHYDslageSSAGFRRRASTRTGCRARVVFKNVTNSAYVVKEFIEEH 120
                          5*****************************************9999999988888889******************************** PP

                 FAR1  86 nHela 90 
                          nH+l+
  Kalax.0006s0086.1.p 121 NHQLT 125
                          ***96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-2031125IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDGAQRWVPD CDSSLKPNVG RLFDTLEYAI SFYKEYARQC GFQIRKATSK KASRSEKVNL  60
QYMYCNRQGF NISKHYDSLA GESSAGFRRR ASTRTGCRAR VVFKNVTNSA YVVKEFIEEH  120
NHQLTAPEYH QFLKSNRSLN YAQQNFVMDC GNLKIGARKS HRILKELSGG YSHIGAQVVD  180
VKNFRRDFKN FVGTSDAQLI IDKFQNNKVV RPGFAFEFCV GENGALERLF WADSTSKSNY  240
DAFGDCVAFD ATYRTNVHYI ATFSNHNAFF SRTCWCTGIF LNIFI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-28FAR1-related sequence 5