PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0094.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 530aa    MW: 58270.6 Da    PI: 4.848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0094.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.42.5e-1271565171373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          lv++L++cAe ++ gdl+la +l+ +++ l  + ++   + ++aayf+ AL++r++      +  l+   t+     e+   ++ ++e++
  Kalax.0006s0094.1.p 156 LVHTLMTCAEWLQRGDLRLAGTLVDEMRSLleRVNSSCGIWKVAAYFVDALNRRVFC-----AGGLSL--TT---PYENEILYHHYYEAC 235
                          689**************************976666667999***************8.....323333..33...3455567789***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+lkf+h+taNqaIlea+eg+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g+rLa++A++++v+f f
  Kalax.0006s0094.1.p 236 PYLKFAHFTANQAILEAFEGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPVLRLTGIGPPSHDGRDSLREIGHRLAELARSVNVRFAF 325
                          ****************************************************************************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          + ++a rled+++++L+v+ +Ea+aVn+++q hrll+++   + ++d+vL  ++sl+Pk+v+v+eqea+hn+++Fl+rf+eal+yys++f
  Kalax.0006s0094.1.p 326 RGVAAPRLEDVRPWMLQVSANEAVAVNSIMQFHRLLASDSIHSPPIDSVLTWIRSLNPKIVTVIEQEANHNQPQFLDRFTEALYYYSTMF 415
                          **9999******************************88877777********************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          dslea++p    +++ + +++l+rei++v++ceg++r+erhe l+ Wr r++e+GFkp++l+++a kqa++ll  ++ +gy+vee++g+l
  Kalax.0006s0094.1.p 416 DSLEAGAP---LAEKQLAEVYLQREICDVLCCEGSAREERHEPLAMWRIRFTESGFKPLHLGSNAFKQASMLLTLFSAEGYSVEENEGCL 502
                          ******64...5566788899********************************************************************* PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgW++rpL+s+SaW
  Kalax.0006s0094.1.p 503 TLGWHSRPLISASAW 517
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.0E-293298IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.0E-1932104No hitNo description
PROSITE profilePS5098562.442130498IPR005202Transcription factor GRAS
PfamPF035148.6E-125156517IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAQYETSASS TASSGSSSSC LTGKLAAVPE IDGQLAGAGY RVRSSELSQV AQRLEQLETV  60
MVSAPSDVSQ LASDAVHYNP TDLAAWVDSL LSEFSQPQLD QLQSQPSNYS DLGYQDDGVV  120
GVAVSELQYP TAAMGESWTH APPQVEVVEE DSGIRLVHTL MTCAEWLQRG DLRLAGTLVD  180
EMRSLLERVN SSCGIWKVAA YFVDALNRRV FCAGGLSLTT PYENEILYHH YYEACPYLKF  240
AHFTANQAIL EAFEGHDCVH VVDFNLMHGL QWPALIQALA LRPGGPPVLR LTGIGPPSHD  300
GRDSLREIGH RLAELARSVN VRFAFRGVAA PRLEDVRPWM LQVSANEAVA VNSIMQFHRL  360
LASDSIHSPP IDSVLTWIRS LNPKIVTVIE QEANHNQPQF LDRFTEALYY YSTMFDSLEA  420
GAPLAEKQLA EVYLQREICD VLCCEGSARE ERHEPLAMWR IRFTESGFKP LHLGSNAFKQ  480
ASMLLTLFSA EGYSVEENEG CLTLGWHSRP LISASAWHAD VTSAAAASR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6014951711377Protein SCARECROW
5b3h_D7e-6014951711377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073596.10.0DELLA protein SLR1-like
SwissprotQ8S4W71e-156GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2H4X2W30.0A0A2H4X2W3_CAMSI; DELLA protein 2
STRINGXP_008343960.10.0(Malus domestica)
STRINGXP_010254273.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-152GRAS family protein