PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0006s0170.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 214aa MW: 24099.2 Da PI: 8.2262

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0006s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72	7.7e-23	156	203	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ e +s+yF++pi+ AA eL+++lT+ K++CR++G+ RWPhRk+ s+ Kalax.0006s0170.1.p 156 LTWEIISQYFYMPIARAAEELNIGLTLFKKRCRELGVGRWPHRKLMSI 203 78899****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.132	136	213	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-19	156	203	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDFGWSSFLH TPFQPSNSYS NLIKSASECT AELTSWEFQY EDPFTASIHQ SDPLYASLNI 60 IDHHFPDDFH GCCRTSSEIS SPGRAITAGS QQIQSDPIGD SEVALRQHQI QQQSVLNAPV 120 KNDLLGVKRT GRKRSRKMRD NCKSATESNN SVAEFLTWEI ISQYFYMPIA RAAEELNIGL 180 TLFKKRCREL GVGRWPHRKL MSIKSLIKNV QAS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550368.1	2e-29	PREDICTED: protein RKD1-like
STRING	XP_010550368.1	7e-29	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-26	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0006s0170.1.p