PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0180.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 352aa    MW: 39104.9 Da    PI: 9.1673
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.2e-16171217455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ Er+RRdriN+++ +L++++P+a      K +Ka++L ++++Y+k+Lq
  Kalax.0006s0180.1.p 171 VHNQSERKRRDRINQKMKTLQKMVPNA-----SKTDKASMLDEVIKYLKQLQ 217
                          5*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.13167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-19170243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17171225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-15172221No hitNo description
SMARTSM003531.6E-16173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEPFYRLNDY DQVAELTWEN GQLGFQGLAP PAAHHSKSTW SAANETLESI VQQGSTVCHH  60
HHHHPQQHSK LNRALNPAAN INSACSSFAA SSSNNHPVPW LELDQCNARA ESLEPSACAN  120
NLRQSNTVMT TTSTEEDFVY QYGSDNKNEG HESKGGTGRS SSTRRSRTAA VHNQSERKRR  180
DRINQKMKTL QKMVPNASKT DKASMLDEVI KYLKQLQSQI QMMNSIRNMP QMMVPLGIQQ  240
QQQLQNQMSL FARTGMNMNM GLMGMGGALN MMHIPRSMSL QPAPQQLHPS ATTSTNTTFP  300
SSFLMVPPMI PTPEISQSMN MDLFTKMAAF YSHQANNNAT ATQEKNSPVS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571978.12e-77transcription factor PIF7 isoform X2
TrEMBLA0A061G4L11e-72A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRINGEOY219716e-73(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-26bHLH family protein