PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0193.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 769aa    MW: 89737.7 Da    PI: 8.2098
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.19.4e-2160146290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++YA++ GFsvr+ k+ + + ++   +++++C k+g+++ + ++    + +++etrtgC+a+++ + + +g+w+v+ l++eHnH+la
  Kalax.0006s0193.1.p  60 LYCDYAHSFGFSVRRGKQAYYRGTKILCWKHYYCAKQGFKNGQPSD--VVSYHKPETRTGCRAMVQFNIDGNGNWKVKFLSEEHNHQLA 146
                          7*****************************************9988..7888999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1860146IPR004330FAR1 DNA binding domain
PfamPF105511.2E-35268362IPR018289MULE transposase domain
PROSITE profilePS509669.681551587IPR007527Zinc finger, SWIM-type
PfamPF044346.6E-6557587IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MMSEHEILQK ATEEESDKQD EANCHDKVIF DSNDEEVNIS ELGRELKGKV VISEKEAYDL  60
YCDYAHSFGF SVRRGKQAYY RGTKILCWKH YYCAKQGFKN GQPSDVVSYH KPETRTGCRA  120
MVQFNIDGNG NWKVKFLSEE HNHQLARHWE RHFLRSARNV SKDKGEVIEQ MVNSGIRPID  180
AYSFMSKVAG GAQTLGFLQK DCYNHLSMKR MSVIENGDAT TLVNHFRKRS ISEGLFYWDV  240
ELDEADRMCN FFWRDARSKE DYNCFGDVIV FDTTYRTNKY DLICAPFIGI NHHMQNVVFG  300
CAFIQDETTK TFIWLFETFL KSMDMKHPKT IFTDGDQAMA KAIKEVFPDT RHRLCLWHIS  360
KNAPSHLGNL KSDRVFYGLW NKCMYDCDSE EEFDMLWMRM VTLHPEIREH KWLNLMFKIR  420
HKWSVGFNRD TFDAGVRSSQ RSESTNRVLN VFVDCTTNLT NFTLAFEDMV ERWRQNEAEE  480
DFHCCQTEPT RLIKNSQILI QAARHYTQKV FSKFQEEYLD GIGATTCTNI ICEGSLYKFE  540
ITLQIVGMKL HTVLFNTDLM EISCSCKKFE TTGWLCSHSL KALTMKNMTM IPDKYIMKRW  600
TKDARKISHF HHFPVHPKAA FEPWTLYCNR AMRYAYKLVM KSKSNDQARE IVMCGLDKME  660
ADLLDLVNGA KSTREPLKKI TSLDDKENQE ISILDPIRVK CKGGSKKRLK GHFEKSKRKR  720
SQQMEITRKV EPILQKSDML PCTVEKQLPN CSYSQILTSH QPTSSWNI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1705719KKRLKGHFEKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787110.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026659730.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2H3XQ200.0A0A2H3XQ20_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3Q0I2230.0A0A3Q0I223_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_008787110.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5