PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0245.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 210aa    MW: 23852.4 Da    PI: 6.0925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0245.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.54e-34131371128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.. 88 
                          lppGfrF P+deelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e ++wyfFs+++  +     + r t++gyWk+  +  
  Kalax.0006s0245.1.p  13 LPPGFRFYPSDEELVVHFLRRKASLLPCHP-DVIPDLELYPYDPWQLRGKALEEGNQWYFFSRKQPPS-----HYRRTNNGYWKKAHHad 96 
                          79*************************999.99**************977777899******997754.....4566899***9765422 PP

                  NAM  89 ..dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +++++s k++l+glk+  vf+ g+ap+g+ t+W+m+ey+l
  Kalax.0006s0245.1.p  97 rqEQTIFS-KQRLIGLKRHYVFHIGEAPSGVMTNWIMDEYSL 137
                          22667777.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-4610166IPR003441NAC domain
PROSITE profilePS5100542.19213166IPR003441NAC domain
PfamPF023651.7E-2214137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGEDGSSNGT RRLPPGFRFY PSDEELVVHF LRRKASLLPC HPDVIPDLEL YPYDPWQLRG  60
KALEEGNQWY FFSRKQPPSH YRRTNNGYWK KAHHADRQEQ TIFSKQRLIG LKRHYVFHIG  120
EAPSGVMTNW IMDEYSLSSD TASSSSKRRG TKTERSKWVV CRVYEQSDGD DEEHGGGSGG  180
GGGGIELSCL DEVFLSLEDE LDDISYPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-341316617165NO APICAL MERISTEM PROTEIN
1ut4_B2e-341316617165NO APICAL MERISTEM PROTEIN
1ut7_A2e-341316617165NO APICAL MERISTEM PROTEIN
1ut7_B2e-341316617165NO APICAL MERISTEM PROTEIN
4dul_A2e-341316617165NAC domain-containing protein 19
4dul_B2e-341316617165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494065.14e-73NAC domain-containing protein 104
SwissprotQ8GWK69e-59NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A067EYC81e-70A0A067EYC8_CITSI; Uncharacterized protein
TrEMBLA0A072UPE91e-70A0A072UPE9_MEDTR; NAC transcription factor-like protein
TrEMBLA0A2H5PUU01e-70A0A2H5PUU0_CITUN; Uncharacterized protein
TrEMBLV4SY371e-70V4SY37_9ROSI; Uncharacterized protein
STRINGXP_006494065.11e-72(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-56xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]