PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0007s0119.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23375.7 Da    PI: 8.4802
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0007s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.37.2e-222372150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k ie+k  r +tfskR++gi+KKA+E+S++C+a+v+ i+fs+tgk y ++
  Kalax.0007s0119.1.p 23 KLIEDKEDRVITFSKRKAGIFKKASEISIMCGAKVLFILFSPTGKAYSFA 72
                         569********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-281574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.741575IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-2516102IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-171737IPR002100Transcription factor, MADS-box
PfamPF003191.1E-212571IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-173752IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-175273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MERSAAAAAM KKTSRGRQKI PMKLIEDKED RVITFSKRKA GIFKKASEIS IMCGAKVLFI  60
LFSPTGKAYS FAHPSVKTVA DKFLGREESE GGKQIRQILE NHLNKRLEKL LLHHSVARSE  120
LEAVNEQVRA MSAAMESENK GWWEANVSEM SSVEEVEQVM KSISDFEVAL SNHFEKLKQQ  180
TVGGEGSDNI NHIVAPYDQL GDVNIFPPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-26AGAMOUS-like 57