PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0007s0120.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 257aa    MW: 28154.2 Da    PI: 7.6392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0007s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.95.4e-183374849
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          r +tfskR++gi KKA EL+v+Cdaeva i+fs++g+ + y
  Kalax.0007s0120.1.p 33 DRLITFSKRKAGINKKATELCVMCDAEVAFILFSPKGNAFAY 74
                         6889*********************************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.8241878IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-201877IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-221989IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-152040IPR002100Transcription factor, MADS-box
PfamPF003196.6E-183074IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-154055IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-155576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
METGGSSRQQ EAGKKKTKGR QKTQMRLVQR EEDRLITFSK RKAGINKKAT ELCVMCDAEV  60
AFILFSPKGN AFAYGHPDVR SVMNKFLGRE EQYPVSGDPR VIQIMDEHRR GKHDELVDIH  120
NMLQSQVNQL AQLKEAVKQM SESRGDQKGW WDAKVADMKT PEEVKEMHNN IVGFQEALCR  180
HMEMLQFIHQ AAAAAPPPPP NPIFVPAFIQ ETPQFLTPPP MAFVNPAGAP VIGLGGDPGG  240
EPSGVGDGGP GAFVGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-21AGAMOUS-like 64