PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0007s0142.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 361aa    MW: 40896.2 Da    PI: 7.6245
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0007s0142.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.9e-2352131286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W+++e++ Li +rre++  +++ k++ +lWe++s+kmr++gf rsp++C++kw+nl k++k+++ +++++      +++++++le
  Kalax.0007s0142.1.p  52 WSQDEIRSLIILRREVDGLFNTCKSNRHLWEQISAKMRRKGFDRSPTMCTDKWRNLLKEFKRVRVQDGGN-----GKMSWYKELE 131
                          ****************************************************************999984.....2457788886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-442109IPR009057Homeodomain-like
PROSITE profilePS500908.24644108IPR017877Myb-like domain
SMARTSM007170.002448110IPR001005SANT/Myb domain
SuperFamilySSF466893.1E-548109IPR009057Homeodomain-like
CDDcd122031.61E-2650115No hitNo description
PfamPF138374.4E-1951133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MYVSEKNRST DAYKVGRVMM VEPISVSPRV MTGESSGEDH EVKAPKKRAE TWSQDEIRSL  60
IILRREVDGL FNTCKSNRHL WEQISAKMRR KGFDRSPTMC TDKWRNLLKE FKRVRVQDGG  120
NGKMSWYKEL EELLRNRSRH AAPPPASVVD SFMHLDDKVV QNAVGAYGPA EDSRPAVNLE  180
TQLDHDGDAL AIAIAPTDPV IADGVPPWSW RETPGTGEQP LPYGGRVISV KWGDYTRRIG  240
IDGSTEAIKE AIKSAFRLRT KRAFWLEDEH QIIRTLDRNM PLGNYTLYLD EGMTVKICLY  300
GGADRIIIRT EEKTFYTDEH FREYLARRGL SGLSELNNGF RSIDTLDDLR PGGAYQGVSE  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-4146129186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248872.11e-162PREDICTED: trihelix transcription factor GT-1-like
SwissprotQ9FX531e-149TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A1U7ZCD81e-161A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like
STRINGXP_010248872.11e-161(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-152Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]