PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0042.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 206aa    MW: 22965.3 Da    PI: 9.1552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0042.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13749754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YI++L
  Kalax.0008s0042.2.p  7 VSERNRRKKLNDRLFALRAVVPNI-----TKMDKASIIKDAISYIQEL 49
                         57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.291149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.57E-12353No hitNo description
SuperFamilySSF474598.11E-18573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-15655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-11749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MASKNIVSER NRRKKLNDRL FALRAVVPNI TKMDKASIIK DAISYIQELH EQEGRLEAEI  60
AGLENNIRMK SMGSMSPSSY EDLKKPSSRK KKKRIDTTSH DVTNNLSSTS DSPIEILELR  120
VAHMGERSVV VSITCSKRGD TMVKLCEAFE SLQLKILTSN MTTFSSNTLV NTLFIQGEED  180
ETQSIKREIE TAIAALNDAR SPMSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14567971Transcription factor MYC2
5gnj_B1e-14567971Transcription factor MYC2
5gnj_E1e-14567971Transcription factor MYC2
5gnj_F1e-14567971Transcription factor MYC2
5gnj_G1e-14567971Transcription factor MYC2
5gnj_I1e-14567971Transcription factor MYC2
5gnj_M1e-14567971Transcription factor MYC2
5gnj_N1e-14567971Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263999.11e-76PREDICTED: transcription factor bHLH35
SwissprotQ2HIV92e-68BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2P5EZP82e-77A0A2P5EZP8_TREOI; Basic helix-loop-helix transcription factor
STRINGVIT_11s0052g00100.t015e-76(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-67bHLH family protein