PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0042.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 257aa    MW: 28765.4 Da    PI: 6.5319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0042.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1360102754
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            Er+RR+++N++++ Lr ++P+      +K++Ka+i + A+ YI++L
  Kalax.0008s0042.3.p  60 VSERNRRKKLNDRLFALRAVVPNI-----TKMDKASIIKDAISYIQEL 102
                          57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.41853102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-1456106No hitNo description
SuperFamilySSF474598.64E-1857126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1559108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1759121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-1160102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEDNIGDEYK NYWETNMFLQ TEELDSWGGG LDETAFSGYY DSSSPDGGGA SSSMASKNIV  60
SERNRRKKLN DRLFALRAVV PNITKMDKAS IIKDAISYIQ ELHEQEGRLE AEIAGLENNI  120
RMKSMGSMSP SSYEDLKKPS SRKKKKRIDT TSHDVTNNLS STSDSPIEIL ELRVAHMGER  180
SVVVSITCSK RGDTMVKLCE AFESLQLKIL TSNMTTFSSN TLVNTLFIQV SFSLPFHFGS  240
FSYDSQIFQP FPKRSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1458120971Transcription factor MYC2
5gnj_B3e-1458120971Transcription factor MYC2
5gnj_E3e-1458120971Transcription factor MYC2
5gnj_F3e-1458120971Transcription factor MYC2
5gnj_G3e-1458120971Transcription factor MYC2
5gnj_I3e-1458120971Transcription factor MYC2
5gnj_M3e-1458120971Transcription factor MYC2
5gnj_N3e-1458120971Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358594.27e-95transcription factor bHLH35-like
SwissprotQ2HIV95e-75BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2P5EZP81e-94A0A2P5EZP8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008358594.14e-94(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-62bHLH family protein