PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0008s0072.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 221aa    MW: 24657.5 Da    PI: 9.2064
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0008s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-202781256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         +k+ +f++eq++ Le +F ++++p+  ++++LA++lgL+ rqV +WFqNrRa+ k
  Kalax.0008s0072.1.p 27 KKKKRFSDEQIRSLEVMFGSESKPDPGSKQQLAAELGLQPRQVAIWFQNRRARLK 81
                         67889************************************************98 PP
2HD-ZIP_I/II118.14.9e-3827119193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+r+s+eq+++LE +F +e+k +p  K++la eLglqprqva+WFqnrRAR k kq+E++y++Lk+ ydal+ + e+L+ke+++L+++
  Kalax.0008s0072.1.p  27 KKKKRFSDEQIRSLEVMFGSESKPDPGSKQQLAAELGLQPRQVAIWFQNRRARLKPKQIEREYDSLKAGYDALACKFESLKKENQSLTAQ 116
                          59***************************************************************************************9 PP

          HD-ZIP_I/II  91 lke 93 
                          l++
  Kalax.0008s0072.1.p 117 LRT 119
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-191384IPR009057Homeodomain-like
PROSITE profilePS5007117.9122383IPR001356Homeobox domain
SMARTSM003894.8E-192587IPR001356Homeobox domain
PfamPF000464.7E-182781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-202890IPR009057Homeodomain-like
CDDcd000865.02E-143184No hitNo description
PRINTSPR000312.7E-65463IPR000047Helix-turn-helix motif
PROSITE patternPS0002705881IPR017970Homeobox, conserved site
PRINTSPR000312.7E-66379IPR000047Helix-turn-helix motif
PfamPF021831.3E-1683123IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTFHEASVCR SARNNNSSGG GGNKMMKKKK RFSDEQIRSL EVMFGSESKP DPGSKQQLAA  60
ELGLQPRQVA IWFQNRRARL KPKQIEREYD SLKAGYDALA CKFESLKKEN QSLTAQLRTL  120
TEKFERVRMD RNGRMGEQTT ASDSAEQAKH RVGDDQRQGG SGEEKLRVVE QLGGGGGGSI  180
PLEMMYSSPF ASSANSWSSE YSCFLDQSTS CGSSQWWEFW *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17583RRARLKPKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3K6Y41e-43A0A1R3K6Y4_9ROSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.15e-35homeobox 12