PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0008s0114.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 275aa MW: 30235.8 Da PI: 6.0584

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0008s0114.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	116	170	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq +Le++F+ +++++++++ LAk+l+L rqV vWFqNrRa+ k Kalax.0008s0114.1.p 116 RKKLRLTREQSAVLEDMFKDHNTLNQKQKVALAKQLDLRPRQVEVWFQNRRARTK 170 678899***********************************************98 PP
2	HD-ZIP_I/II	124.2	6e-40	116	205	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LE++F+ +++L++++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr + Kalax.0008s0114.1.p 116 RKKLRLTREQSAVLEDMFKDHNTLNQKQKVALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 204 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Kalax.0008s0114.1.p 205 L 205 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	5.5E-7	7	86	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.5E-18	96	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-18	109	173	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.989	112	172	IPR001356	Homeobox domain
SMART	SM00389	3.8E-16	114	176	IPR001356	Homeobox domain
CDD	cd00086	7.51E-16	116	173	No hit	No description
Pfam	PF00046	5.9E-16	116	170	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	147	170	IPR017970	Homeobox, conserved site
SMART	SM00340	8.2E-27	172	215	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.2E-11	172	206	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEGDKEDDGL ELSLTLKCPG NSSNLSPPAL QQPAHWQLLF QPIDRNVYQR RGAAIPVVNL 60 AEDEIDVSSP NDSTVSSLSG KRSDREANNV NLNGDENEAE RASSSGKMSD EEDGGRKKLR 120 LTREQSAVLE DMFKDHNTLN QKQKVALAKQ LDLRPRQVEV WFQNRRARTK LKQTEVDCEY 180 LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ MYMQMTPATT LTICPSCERV SSSAAAVGGN 240 GHVAGASGGG VNNSAGQMNI PWATLPVHHG DGQP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	172	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006368991.1	6e-91	homeobox-leucine zipper protein HAT4
Refseq	XP_006445396.1	3e-91	homeobox-leucine zipper protein ATHB-4
Refseq	XP_006464444.1	3e-91	homeobox-leucine zipper protein ATHB-4 isoform X1
Swissprot	P46602	1e-76	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2G5CBT7	3e-91	A0A2G5CBT7_AQUCA; Uncharacterized protein
STRING	Aquca_067_00037.1	6e-92	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-77	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Kalax.0008s0114.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]