PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0009s0083.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 377aa MW: 42490.7 Da PI: 6.6383

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0009s0083.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.4	1.3e-44	14	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+k+++++l + e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+ Kalax.0009s0083.1.p 14 MLPGFRFHPTDEELVAFYLKRKIQQRPLAI-ELIKQLDIYKHDPWDLPKLAATGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 102 579**********************999.89***********8888899******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfy dW+mhe+rl Kalax.0009s0083.1.p 103 PIYSSeGTKCIGLKKSLVFY---------KDWMMHEFRL 132 956667******.........38****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.071	14	166	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-51	14	166	IPR003441	NAC domain
Pfam	PF02365	5.3E-25	16	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MDEGNDDDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP 60 KLAATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKDWMMHEF RLPASLADYS VPPKRFTDKA NNPVNDAWAI CRIFKKTNTT AQRAVSHCWV 180 SPTSPDNLKP TKCGGQSSQL TSAEPNIISM TPKPTSPNFP FSYNTLSHQQ QHSCATTLSH 240 PDLSYYKSIT PTSHIPNNLI LPPHDNSCIS SMALFNVASS PMTFQEFSKA AASDSSELTE 300 FPSTLLQALL HEEEHHLPEL RENASCGVNS DDTWNLLNPG FGFSVSDPAS EAWRSNLVWD 360 SSPCPSEMST NYKCYT*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MDEGNDDDKI DEIMLPGFRF HPTDEELVAF YLKRKIQQRP LAIELIKQLD IYKHDPWDLP  60
KLAATGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKDWMMHEF RLPASLADYS VPPKRFTDKA NNPVNDAWAI CRIFKKTNTT AQRAVSHCWV  180
SPTSPDNLKP TKCGGQSSQL TSAEPNIISM TPKPTSPNFP FSYNTLSHQQ QHSCATTLSH  240
PDLSYYKSIT PTSHIPNNLI LPPHDNSCIS SMALFNVASS PMTFQEFSKA AASDSSELTE  300
FPSTLLQALL HEEEHHLPEL RENASCGVNS DDTWNLLNPG FGFSVSDPAS EAWRSNLVWD  360
SSPCPSEMST NYKCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-46	16	173	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-46	16	173	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-46	16	173	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-46	16	173	19	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-46	16	173	19	171	NAC domain-containing protein 19
4dul_B	4e-46	16	173	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015895075.1	1e-128	protein FEZ
Swissprot	Q9ZVH0	4e-95	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U8A9X4	1e-123	A0A1U8A9X4_NELNU; protein FEZ
STRING	XP_010258365.1	1e-123	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	6e-96	NAC family protein

Link Out ? help Back to Top
Phytozome	Kalax.0009s0083.1.p

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]