PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0009s0179.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 228aa MW: 25594.4 Da PI: 6.6686

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0009s0179.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.6	9.4e-15	184	223	3	42
SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 3 qvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 q egC+adl+ ak+yh+rhkvCe+hsk+++v++ gl+ rf Kalax.0009s0179.1.p 184 QTEGCAADLTIAKQYHQRHKVCEFHSKTSTVIAGGLTLRF 223 89***********************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-14	177	224	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	13.879	180	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-13	181	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-9	184	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGMNCTDFED GDISGYEDDD FYAEIRRQIL ILTADDEDED EDAASGRVKK LSSSRATRKH 60 RGNDFQNCLG QDMKSHNGDL RRIFNTNASN DPQIHHFALA LDYAHQNAVF WSSLNPQCLL 120 LHTPALPKRS VLLLCKRWVV SRGRDSGNLG WQTYYSAQDD DFVSHLYYRG GLGGGRSVNA 180 PRFQTEGCAA DLTIAKQYHQ RHKVCEFHSK TSTVIAGGLT LRFFIEG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	cassava4.1_023056m	9e-26	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	2e-22	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Kalax.0009s0179.1.p