PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0242.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 224aa    MW: 24363.6 Da    PI: 5.2445
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0242.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.8e-41551541100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C ++C lapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vye+ ar+rdPvyG++g i +lq+q+++l
  Kalax.0009s0242.1.p  55 PCAACKILRRRCDDKCLLAPYFPPSDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEGTARLRDPVYGCAGAICHLQRQVSEL 144
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +aela++++e
  Kalax.0009s0242.1.p 145 QAELAKAHAE 154
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.38854155IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-4155152IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MESSSGKTAP PTLSITPTTF NSSLSSSSSS PPLSHSSPST LMLPPPQSQV IVISPCAACK  60
ILRRRCDDKC LLAPYFPPSD PLKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEGT  120
ARLRDPVYGC AGAICHLQRQ VSELQAELAK AHAEILTIQV QKENLLLASI WTDDDQDQPT  180
TISYGQCADV NQNDELYGIA SCMDHPSVRA STLESLWHDL REF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-425415610112LOB family transfactor Ramosa2.1
5ly0_B3e-425415610112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424648.11e-70LOB domain-containing protein 1
SwissprotQ9LQR02e-66LBD1_ARATH; LOB domain-containing protein 1
TrEMBLV4RTD13e-69V4RTD1_9ROSI; Uncharacterized protein
STRINGXP_006424648.14e-70(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-68LOB domain-containing protein 1